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This page has information on various published and pending Græmlin-related publications.

Genome Research Supplementary Information

The complete raw output for the 10-way multiple alignment can be found in alignments.txt.

Below is a detailed description of the sample alignments analyzed in Figures 7-9. These alignments are reproduced here, with each equivalence class identified by an ID number.

Jump to: Figure 7A | Figure 7B | Figure 8 | Figure 9


Figure 7A: DNA replication, pairwise alignment.

ID Species GI Number Gene name Synonym Gene product
1 Caulobacter_crescentus 16126217 - CC1974 topoisomerase IV, subunit B
1 Escherichia_coli_K12 49176395 gyrB b3699 DNA gyrase subunit B, type II topoisomerase, ATPase activity
2 Caulobacter_crescentus 16124415 - CC0160 DNA gyrase subunit B
2 Escherichia_coli_K12 16130926 parE b3030 DNA topoisomerase IV subunit B
3 Caulobacter_crescentus 16125813 - CC1566 topoisomerase IV, subunit A
3 Escherichia_coli_K12 16130915 parC b3019 DNA topoisomerase IV subunit A
4 Caulobacter_crescentus 16125827 - CC1580 DNA gyrase subunit A
4 Escherichia_coli_K12 16130166 gyrA b2231 DNA gyrase, subunit A, type II topoisomerase
5 Caulobacter_crescentus 16124411 - CC0156 DNA polymerase III, beta subunit
5 Escherichia_coli_K12 16131569 dnaN b3701 DNA polymerase III, beta-subunit
6 Caulobacter_crescentus 16124264 - CC0008 chromosomal replication initiator protein DnaA
6 Escherichia_coli_K12 16131570 dnaA b3702 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator
7 Caulobacter_crescentus 16125911 - CC1665 replicative DNA helicase
7 Escherichia_coli_K12 16131878 dnaB b4052 replicative DNA helicase; chromosome replication; chain elongation
8 Caulobacter_crescentus 16127985 - CC3755 glucose inhibited division protein A
8 Escherichia_coli_K12 16131609 gidA b3741 glucose-inhibited division protein, oxidoreductase-like, FAD/NAD(P)-binding
9 Caulobacter_crescentus 16127984 - CC3754 glucose inhibited division protein B, putative
9 Escherichia_coli_K12 16131608 gidB b3740 glucose-inhibited division protein
10 Caulobacter_crescentus 16124414 - CC0159 recF protein
10 Escherichia_coli_K12 16131568 recF b3700 gap repair protein
11 Caulobacter_crescentus 16127986 - CC3756 thiophene and furan oxidation protein ThdF
11 Escherichia_coli_K12 16131574 trmE b3706 GTPase involved in synthesis of hypermodified nucleoside, tRNA 5-methylaminomethyl-2-thiouridine; involved in thiophene and furan oxidation


Figure 7B: DNA replication, multiple alignment.

ID Species GI Number Gene name Synonym Gene product
1 Campylobacter_jejuni 15791401 dnaN Cj0002 DNA polymerase III, beta chain
1 Caulobacter_crescentus 16124411 - CC0156 DNA polymerase III, beta subunit
1 Escherichia_coli_K12 16131569 dnaN b3701 DNA polymerase III, beta-subunit
1 Helicobacter_pylori_26695 15645127 - HP0500 DNA polymerase III beta-subunit (dnaN)
1 Mycobacterium_tuberculosis_H37Rv 15607144 dnaN Rv0002 DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE)
1 Salmonella_typhimurium_LT2 16767122 dnaN STM3837 DNA polymerase III subunit beta
1 Streptococcus_pneumoniae_TIGR4 15899951 - SP0002 DNA polymerase III, beta subunit
1 Synechocystis_PCC6803 16329463 dnaN slr0965 DNA polymerase III beta subunit
1 Vibrio_cholerae 15640045 - VC0013 DNA polymerase III, beta chain
2 Campylobacter_jejuni 15792287 - Cj0958c putative membrane protein
2 Caulobacter_crescentus 16125020 - CC0767 60 kd inner-membrane protein
2 Escherichia_coli_K12 16131573 yidC b3705 60 KD inner-membrane protein
2 Helicobacter_pylori_26695 15646059 - HP1450 60 kDa inner-membrane protein
2 Mycobacterium_tuberculosis_H37Rv 15611057 - Rv3921c PROBABLE CONSERVED TRANSMEMBRANE PROTEIN
2 Salmonella_typhimurium_LT2 16767127 yidC STM3842 putative preprotein translocase subunit
2 Streptococcus_pneumoniae_TIGR4 15901798 - SP1975 SpoIIIJ family protein
2 Streptococcus_pneumoniae_TIGR4 15901862 - SP2041 SpoIIIJ family protein
2 Synechocystis_PCC6803 16330836 - slr1471 inner membrane protein
2 Vibrio_cholerae 15640036 - VC0004 inner membrane protein, 60 kDa
3 Campylobacter_jejuni 15792324 - Cj0997 gidB homolog
3 Escherichia_coli_K12 16131608 gidB b3740 glucose-inhibited division protein
3 Helicobacter_pylori_26695 15645677 - HP1063 glucose-inhibited division protein (gidB)
3 Mycobacterium_tuberculosis_H37Rv 15611055 gid Rv3919c PROBABLE GLUCOSE-INHIBITED DIVISION PROTEIN B GID
3 Salmonella_typhimurium_LT2 39546379 gidB STM3873.S glucose-inhibited division protein B
3 Streptococcus_pneumoniae_TIGR4 15901145 - SP1285 glucose-inhibited division protein B
3 Synechocystis_PCC6803 16331741 gidB slr0072 glucose inhibited division protein B
3 Vibrio_cholerae 15642767 - VC2774 glucose inhibited division protein B
4 Campylobacter_jejuni 15792481 dnaX Cj1157 putative DNA polymerase III subunit gamma
4 Caulobacter_crescentus 16124522 - CC0267 DNA polymerase III, gamma and tau subunits
4 Escherichia_coli_K12 16128454 dnaX b0470 DNA polymerase III, tau and gamma subunits; DNA elongation factor III
4 Helicobacter_pylori_26695 15645339 - HP0717 DNA polymerase III gamma and tau subunits (dnaX)
4 Mycobacterium_tuberculosis_H37Rv 15610857 dnaZX Rv3721c DNA POLYMERASE III (SUBUNIT GAMMA/TAU) DNAZ/X
4 Salmonella_typhimurium_LT2 16763864 dnaX STM0484 DNA polymerase III tau/gamma subunits
4 Streptococcus_pneumoniae_TIGR4 15900748 - SP0865 DNA polymerase III, gamma and tau subunits
4 Synechocystis_PCC6803 16330139 dnaX sll1360 DNA polymerase III subunit
4 Vibrio_cholerae 15641067 - VC1054 DNA polymerase III, subunits gamma and tau
5 Campylobacter_jejuni 15791400 dnaA Cj0001 chromosomal replication initiator protein
5 Caulobacter_crescentus 16124264 - CC0008 chromosomal replication initiator protein DnaA
5 Escherichia_coli_K12 16131570 dnaA b3702 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator
5 Helicobacter_pylori_26695 15646137 - HP1529 chromosomal replication initiator protein (dnaA)
5 Mycobacterium_tuberculosis_H37Rv 15607143 dnaA Rv0001 CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA
5 Salmonella_typhimurium_LT2 16767123 dnaA STM3838 DNA replication initiator protein
5 Streptococcus_pneumoniae_TIGR4 15899950 - SP0001 chromosomal replication initiator protein DnaA
5 Synechocystis_PCC6803 16330393 dnaA sll0848 chromosomal replication initiator protein; DnaA
5 Synechocystis_PCC6803 16330821 dnaG sll1868 DNA primase
5 Vibrio_cholerae 15640044 - VC0012 chromosomal DNA replication initiator DnaA
6 Campylobacter_jejuni 15791402 gyrB Cj0003 DNA gyrase subunit B
6 Caulobacter_crescentus 16124415 - CC0160 DNA gyrase subunit B
6 Caulobacter_crescentus 16126217 - CC1974 topoisomerase IV, subunit B
6 Escherichia_coli_K12 49176395 gyrB b3699 DNA gyrase subunit B, type II topoisomerase, ATPase activity
6 Helicobacter_pylori_26695 15645128 - HP0501 DNA gyrase, sub B (gyrB)
6 Mycobacterium_tuberculosis_H37Rv 15607147 gyrB Rv0005 DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
6 Salmonella_typhimurium_LT2 16767120 gyrB STM3835 DNA gyrase subunit B
6 Streptococcus_pneumoniae_TIGR4 15900699 - SP0806 DNA gyrase subunit B
6 Streptococcus_pneumoniae_TIGR4 15900737 - SP0852 topoisomerase IV, subunit B
6 Synechocystis_PCC6803 16330312 gyrB sll2005 DNA gyrase B subunit
6 Vibrio_cholerae 15640047 - VC0015 DNA gyrase, subunit B
6 Vibrio_cholerae 15642428 - VC2431 topoisomerase IV, subunit B
7 Campylobacter_jejuni 15792285 thdF Cj0956c putative thiophene and furan oxidation protein
7 Caulobacter_crescentus 16127986 - CC3756 thiophene and furan oxidation protein ThdF
7 Escherichia_coli_K12 16131574 trmE b3706 GTPase involved in synthesis of hypermodified nucleoside, tRNA 5-methylaminomethyl-2-thiouridine; involved in thiophene and furan oxidation
7 Helicobacter_pylori_26695 15646061 - HP1452 thiophene and furan oxidizer (tdhF)
7 Mycobacterium_tuberculosis_H37Rv 15608851 engA Rv1713 PROBABLE GTP-BINDING PROTEIN ENGA
7 Salmonella_typhimurium_LT2 16767128 trmE STM3843 GTPase
7 Streptococcus_pneumoniae_TIGR4 15900887 - SP1016 thiophene and furan oxidation protein ThdF
7 Streptococcus_pneumoniae_TIGR4 15901543 - SP1709 phosphoglycerate dehydrogenase-related protein
7 Synechocystis_PCC6803 16330488 thdF sll1615 thiophen and furan oxidation protein
7 Synechocystis_PCC6803 16330798 - slr1974 hypothetical protein
7 Synechocystis_PCC6803 16331223 Era slr0321 GTP-binding protein Era
7 Vibrio_cholerae 15640035 - VC0003 thiophene and furan oxidation protein ThdF


Figure 7: Cell division and cell envelope biogenesis.

ID Species GI Number Gene name Synonym Gene product
1 Campylobacter_jejuni 15792366 murG Cj1039 putative UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1 Caulobacter_crescentus 16126790 - CC2551 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1 Escherichia_coli_K12 16128083 murG b0090 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1 Helicobacter_pylori_26695 15645769 - HP1155 transferase, peptidoglycan synthesis (murG)
1 Mycobacterium_tuberculosis_H37Rv 15609290 murG Rv2153c Probable UPD-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase MurG
1 Salmonella_typhimurium_LT2 16763518 murG STM0128 UDP-N-acetylglucosamine/N-acetylmuramyl-pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1 Streptococcus_pneumoniae_TIGR4 15900590 - SP0689 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1 Streptomyces_coelicolor 21220564 - SCO2084 putative UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1 Synechocystis_PCC6803 16332235 murG slr1656 UDP-N-acetylglucosamine-N-acetylmuramyl-(pentape ptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1 Vibrio_cholerae 15642398 - VC2401 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2 Campylobacter_jejuni 15791799 murD Cj0432c UDP-N-acetylmuramoylalanine--D-glutamate ligase
2 Caulobacter_crescentus 16126795 - CC2556 UDP-N-acetylmuramoylalanine--D-glutamate ligase
2 Escherichia_coli_K12 16128081 murD b0088 UDP-N-acetylmuramoylalanine-D-glutamate ligase
2 Helicobacter_pylori_26695 15645121 - HP0494 UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD)
2 Mycobacterium_tuberculosis_H37Rv 15609292 murD Rv2155c Probable UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD
2 Salmonella_typhimurium_LT2 16763516 murD STM0126 UDP-N-acetylmuramoylalanine-D-glutamate ligase
2 Streptococcus_pneumoniae_TIGR4 15900589 - SP0688 UDP-N-acetylmuramoylalanine--D-glutamate ligase
2 Streptomyces_coelicolor 21220566 - SCO2086 putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
2 Synechocystis_PCC6803 16330305 murD sll2010 UDP-N-acetylmuramoylalanine--D-glutamate ligase
2 Synechocystis_PCC6803 16332094 murC slr1423 UDP-N-acetylmuramate-alanine ligase
2 Vibrio_cholerae 15642400 - VC2403 UDP-N-acetylmuramoylalanine--D-glutamate ligase
3 Campylobacter_jejuni 15791800 mraY Cj0433c phospho-N-acetylmuramoyl-pentapeptide- transferase
3 Escherichia_coli_K12 16128080 mraY b0087 phospho-N-acetylmuramoyl-pentapeptide transferase
3 Helicobacter_pylori_26695 15645120 - HP0493 phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY)
3 Mycobacterium_tuberculosis_H37Rv 15609293 murX Rv2156c Probable phospho-N-acetylmuramoyl-pentappeptidetransferase MurX
3 Salmonella_typhimurium_LT2 16763515 mraY STM0125 phospho-N-acetylmuramoyl-pentapeptide transferase
3 Streptococcus_pneumoniae_TIGR4 15900268 - SP0337 phospho-N-acetylmuramoyl-pentapeptide-transferase
3 Streptomyces_coelicolor 21220567 - SCO2087 putative phospho-N-acetylmuramoyl-pentapeptide-transferase
3 Synechocystis_PCC6803 16331969 mraY sll0657 phospho-N-acetylmuramoyl-pentapeptide-transferas e
3 Vibrio_cholerae 15642401 - VC2404 phospho-N-acetylmuramoyl-pentapeptide-transferase
4 Campylobacter_jejuni 15792042 - Cj0693c hypothetical protein
4 Caulobacter_crescentus 16126800 - CC2562 hypothetical protein
4 Escherichia_coli_K12 16128075 yabC b0082 S-adenosyl-dependent methyl transferase
4 Helicobacter_pylori_26695 15645330 - HP0707 hypothetical protein
4 Mycobacterium_tuberculosis_H37Rv 15609302 - Rv2165c hypothetical protein
4 Salmonella_typhimurium_LT2 16763510 yabC STM0120 putative S-adenosyl methionine adenyltransferase
4 Streptococcus_pneumoniae_TIGR4 15900265 - SP0334 yllC protein
4 Streptomyces_coelicolor 21220572 - SCO2092 hypothetical protein
4 Synechocystis_PCC6803 16330092 - sll1144 hypothetical protein
4 Vibrio_cholerae 15642406 - VC2409 hypothetical protein
5 Campylobacter_jejuni 15792946 murE Cj1641 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
5 Caulobacter_crescentus 16126797 - CC2559 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
5 Escherichia_coli_K12 16128078 murE b0085 UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
5 Helicobacter_pylori_26695 15646103 - HP1494 UDP-MurNac-tripeptide synthetase (murE)
5 Mycobacterium_tuberculosis_H37Rv 15609295 murE Rv2158c Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat e ligase MurE
5 Salmonella_typhimurium_LT2 16763513 murE STM0123 UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
5 Streptococcus_pneumoniae_TIGR4 15901375 - SP1530 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
5 Streptomyces_coelicolor 21220568 - SCO2088 putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase
5 Synechocystis_PCC6803 16332016 murE slr0528 UDP-MurNac-tripeptide synthetase
5 Vibrio_cholerae 15642403 - VC2406 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
6 Campylobacter_jejuni 15792133 murF Cj0795c putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- ligase
6 Caulobacter_crescentus 16126796 - CC2558 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
6 Escherichia_coli_K12 16128079 murF b0086 D-alanine:D-alanine-adding enzyme
6 Helicobacter_pylori_26695 15645360 - HP0740 UDP-MurNac-pentapeptide presynthetase (murF)
6 Mycobacterium_tuberculosis_H37Rv 15609294 murF Rv2157c Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D-alanyl ligase MurF
6 Salmonella_typhimurium_LT2 16763514 murF STM0124 D-alanine-D-alanine ligase
6 Streptococcus_pneumoniae_TIGR4 15901505 - SP1670 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
6 Streptomyces_coelicolor 21220569 - SCO2089 putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
6 Synechocystis_PCC6803 16330763 murF slr1351 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase
6 Vibrio_cholerae 15642402 - VC2405 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
7 Campylobacter_jejuni 15792381 murC Cj1054c UDP-N-acetylmuramate--alanine ligase
7 Caulobacter_crescentus 16126785 - CC2546 UDP-N-acetylmuramate--alanine ligase
7 Escherichia_coli_K12 16128084 murC b0091 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
7 Helicobacter_pylori_26695 15645247 - HP0623 UDP-N-acetylmuramate-alanine ligase (murC)
7 Mycobacterium_tuberculosis_H37Rv 15609289 murC Rv2152c Probable UDP-N-acetylmuramate-alanine ligase MurC
7 Salmonella_typhimurium_LT2 16763519 murC STM0129 UDP-N-acetyl-muramate-alanine ligase
7 Streptococcus_pneumoniae_TIGR4 15901367 - SP1521 UDP-N-acetylmuramate--alanine ligase
7 Streptomyces_coelicolor 21224390 - SCO6060 putative UDP-N-acetylmuramoyl-L-alanine ligase
7 Vibrio_cholerae 15642397 - VC2400 UDP-N-acetylmuramate--alanine ligase
8 Campylobacter_jejuni 15792045 ftsZ Cj0696 cell division protein ftsZ
8 Caulobacter_crescentus 16126779 - CC2540 cell division protein FtsZ
8 Escherichia_coli_K12 16128088 ftsZ b0095 cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase
8 Helicobacter_pylori_26695 15645594 - HP0979 cell divison protein (ftsZ)
8 Mycobacterium_tuberculosis_H37Rv 15609287 ftsZ Rv2150c cell division protein FtsZ
8 Salmonella_typhimurium_LT2 16763523 ftsZ STM0133 cell division protein
8 Streptococcus_pneumoniae_TIGR4 15901501 - SP1666 cell division protein FtsZ
8 Streptomyces_coelicolor 21220562 - SCO2082 cell division protein
8 Synechocystis_PCC6803 16330088 ftsZ sll1633 cell division FtsZ protein
8 Vibrio_cholerae 15642394 - VC2397 cell division protein FtsZ
9 Campylobacter_jejuni 15792605 mrdB Cj1282 RodA protein homolog
9 Caulobacter_crescentus 16126791 - CC2552 cell division protein DivB
9 Escherichia_coli_K12 16128082 ftsW b0089 cell division; membrane protein involved in shape determination
9 Helicobacter_pylori_26695 15645363 - HP0743 rod shape-determining protein (mreB)
9 Helicobacter_pylori_26695 15646167 - HP1560 cell division protein (ftsW)
9 Mycobacterium_tuberculosis_H37Rv 15609291 ftsW Rv2154c FtsW-like protein FtsW
9 Salmonella_typhimurium_LT2 16763517 ftsW STM0127 essential cell division gene
9 Streptococcus_pneumoniae_TIGR4 15900936 - SP1067 cell division protein FtsW, putative
9 Streptomyces_coelicolor 21220565 - SCO2085 putative cell division protein
9 Streptomyces_coelicolor 21223665 - SCO5302 putative integral membrane cell-cycle protein
9 Synechocystis_PCC6803 16330861 mrdB slr1267 rod-shape-determining protein
9 Vibrio_cholerae 15640965 - VC0949 rod shape-determining protein RodA
9 Vibrio_cholerae 15642399 - VC2402 cell division protein FtsW
10 Campylobacter_jejuni 15791886 pbpB Cj0525c putative penicillin-binding protein
10 Caulobacter_crescentus 16126798 - CC2560 penicillin-binding protein B
10 Escherichia_coli_K12 16128077 ftsI b0084 division-specific transpeptidase, penicillin-binding protein 3
10 Helicobacter_pylori_26695 15646163 - HP1556 cell division protein (ftsI)
10 Mycobacterium_tuberculosis_H37Rv 15609300 pbpB Rv2163c Probable penicillin-binding membrane protein pbpB
10 Salmonella_typhimurium_LT2 16763512 ftsI STM0122 division specific transpeptidase
10 Salmonella_typhimurium_LT2 16765177 - STM1836 putative penicillin-binding protein 3
10 Streptococcus_pneumoniae_TIGR4 15900267 - SP0336 penicillin-binding protein 2X
10 Streptomyces_coelicolor 21220363 - SCO1875 putative secreted penicillin binding protein
10 Streptomyces_coelicolor 21220570 - SCO2090 cell division protein
10 Streptomyces_coelicolor 21222416 - SCO4013 putative secreted penicillin-binding protein
10 Streptomyces_coelicolor 21223664 - SCO5301 putative secreted penicillin-binding protein
10 Synechocystis_PCC6803 16329735 ftsI sll1833 penicillin-binding protein
10 Vibrio_cholerae 15642404 - VC2407 penicillin-binding protein 3


Figure 9: DNA update and recombination.

ID Species GI Number Gene name Synonym Gene product
1 Campylobacter_jejuni 15792294 - Cj0965c hypothetical protein
1 Caulobacter_crescentus 16127464 - CC3234 hypothetical protein
1 Escherichia_coli_K12 16128711 ybgC b0736 hypothetical protein
1 Helicobacter_pylori_26695 15645123 - HP0496 hypothetical protein
1 Salmonella_typhimurium_LT2 16764114 ybgC STM0744 putative esterase
1 Vibrio_cholerae 15641842 - VC1840 hypothetical protein
2 Campylobacter_jejuni 15791500 - Cj0112 periplasmic protein
2 Caulobacter_crescentus 16127460 - CC3230 tolB protein
2 Escherichia_coli_K12 16128715 tolB b0740 periplasmic protein involved in the tonb-independent uptake of group A colicins
2 Helicobacter_pylori_26695 15645740 - HP1126 colicin tolerance-like protein (tolB)
2 Salmonella_typhimurium_LT2 16764118 tolB STM0748 Tol import system periplasmic protein precursor
2 Vibrio_cholerae 15641838 - VC1836 tolB protein
3 Campylobacter_jejuni 15793033 ruvC Cj1731c crossover junction endodeoxyribonuclease
3 Caulobacter_crescentus 16127468 - CC3238 Holliday junction resolvase
3 Escherichia_coli_K12 16129816 ruvC b1863 Holliday junction nuclease
3 Helicobacter_pylori_26695 15645496 - HP0877 Holliday junction endodeoxyribonuclease (ruvC)
3 Salmonella_typhimurium_LT2 16765240 ruvC STM1898 Holliday junction nuclease
3 Vibrio_cholerae 15641849 - VC1847 crossover junction endodeoxyribonuclease RuvC
4 Campylobacter_jejuni 15792137 ruvA Cj0799c putative Holliday junction DNA helicase
4 Caulobacter_crescentus 16127467 - CC3237 Holliday junction DNA helicase RuvA
4 Escherichia_coli_K12 16129814 ruvA b1861 Holliday junction helicase subunit B; branch migration; repair
4 Helicobacter_pylori_26695 15645501 - HP0883 Holliday junction DNA helicase (ruvA)
4 Salmonella_typhimurium_LT2 16765237 ruvA STM1895 Holliday junction helicase subunit A
4 Vibrio_cholerae 15641848 - VC1846 Holliday junction DNA helicase RuvA
5 Campylobacter_jejuni 15791498 exbD3 Cj0110 exbD/tolR family transport protein
5 Campylobacter_jejuni 15791567 exbD1 Cj0180 biopolymer transport protein
5 Campylobacter_jejuni 15792934 exbD2 Cj1629 putative exbD/tolR family transport protein
5 Caulobacter_crescentus 16126574 - CC2335 ExbD/TolR family protein
5 Caulobacter_crescentus 16127462 - CC3232 ExbD/TolR family protein
5 Escherichia_coli_K12 16128713 tolR b0738 putative inner membrane protein, involved in the tonB-independent uptake of group A colicins
5 Helicobacter_pylori_26695 15645743 - HP1129 biopolymer transport protein (exbD)
5 Helicobacter_pylori_26695 15645953 - HP1340 biopolymer transport protein (exbD)
5 Helicobacter_pylori_26695 15646055 - HP1446 biopolymer transport protein (exbD)
5 Salmonella_typhimurium_LT2 16764116 tolR STM0746 Tol import sytem inner membrane protein
5 Vibrio_cholerae 15641840 - VC1838 tolR membrane protein
6 Campylobacter_jejuni 15791497 exbB3 Cj0109 exbB/tolQ family transport protein
6 Campylobacter_jejuni 15791566 exbB1 Cj0179 biopolymer transport protein
6 Campylobacter_jejuni 15792933 exbB2 Cj1628 putative exbB/tolQ family transport protein
6 Caulobacter_crescentus 16126575 - CC2336 MotA/TolQ/ExbB proton channel family protein
6 Caulobacter_crescentus 16127463 - CC3233 MotA/TolQ/ExbB proton channel family protein
6 Escherichia_coli_K12 16128712 tolQ b0737 inner membrane protein required for outer membrane integrity, uptake of group A colicins and phage DNA
6 Helicobacter_pylori_26695 15645744 - HP1130 biopolymer transport protein (exbB)
6 Helicobacter_pylori_26695 15645952 - HP1339 biopolymer transport protein (exbB)
6 Helicobacter_pylori_26695 15646054 - HP1445 biopolymer transport protein (exbB)
6 Salmonella_typhimurium_LT2 16764115 tolQ STM0745 Tol import system inner membrane protein
6 Vibrio_cholerae 15641841 - VC1839 tolQ protein
7 Campylobacter_jejuni 15791501 pal Cj0113 peptidoglycan associated lipoprotein (omp18)
7 Caulobacter_crescentus 16124456 - CC0201 OmpA family protein
7 Caulobacter_crescentus 16127077 - CC2845 OmpA family protein
7 Caulobacter_crescentus 16127459 - CC3229 OmpA family protein
7 Caulobacter_crescentus 16127724 - CC3494 OmpA family protein
7 Escherichia_coli_K12 16128716 pal b0741 peptidoglycan-associated lipoprotein
7 Helicobacter_pylori_26695 15645739 - HP1125 peptidoglycan associated lipoprotein precursor (omp18)
7 Salmonella_typhimurium_LT2 16764119 pal STM0749 peptidoglycan-associated lipoprotein precursor
7 Vibrio_cholerae 15641837 - VC1835 peptidoglycan-associated lipoprotein